File location:
All files that we are using in this class can be downloaded here.

Other resources:
There are many great websites that introduce you how to operate Linux from the command line. Much of the material presented here is taken together from various secondary sources that I encourage to discover by yourself.

The comprehensive Linux course LinuxFoundationX: LFS101x.2 Introduction to Linux offered at edx gives you a great introduction to Linux and then continuous into a deeper level of programming.

Keith Bradnam & Ian Korf offer a great introduction to Unix (and Perl) specifically for biologist on their website.

If you you want to build up general knowledge about computer programming, I recommend the highly informative as well as entertaining CS50 seminar by David J. Malan.

Useful resources for git:

Git - Primary Git SCM website.

Try Git - Code School - More interactive practice with Git.

Free Git Pro Book - Great free in-depth book about Git.

Github.com - Free collaborative web-based portal for Git.

Bitbucket.org - Free collaborative web-based protal for Git.

More help for programming with Python:

Python Practice Book - Comprehensive Python Manual.

Python data types - Guide through all Python data types.